Alternative Molecular-Based Diagnostic Methods of Plant Pathogenic Fungi Affecting Berry Crops-A Review.
Identifieur interne : 000585 ( Main/Exploration ); précédent : 000584; suivant : 000586Alternative Molecular-Based Diagnostic Methods of Plant Pathogenic Fungi Affecting Berry Crops-A Review.
Auteurs : Dominika Malarczyk [Pologne] ; Jacek Panek [Pologne] ; Magdalena Fr C [Pologne]Source :
- Molecules (Basel, Switzerland) [ 1420-3049 ] ; 2019.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Champignons.
- microbiologie : Maladies des plantes, Rosaceae.
- Espaceur de l'ADN ribosomique, Phénotype, Produits agricoles, Techniques de diagnostic moléculaire.
English descriptors
- KwdEn :
- MESH :
- chemical : DNA, Ribosomal Spacer.
- genetics : Fungi.
- microbiology : Plant Diseases, Rosaceae.
- Crops, Agricultural, Molecular Diagnostic Techniques, Phenotype.
Abstract
Increasing consumer awareness of potentially harmful pesticides used in conventional agriculture has prompted organic farming to become notably more prevalent in recent decades. Central European countries are some of the most important producers of blueberries, raspberries and strawberries in the world and organic cultivation methods for these fruits have a significant market share. Fungal pathogens are considered to be the most significant threat to organic crops of berries, causing serious economic losses and reducing yields. In order to ameliorate the harmful effects of pathogenic fungi on cultivations, the application of rapid and effective identification methods is essential. At present, various molecular methods are applied for fungal species recognition, such as PCR, qPCR, LAMP and NGS.
DOI: 10.3390/molecules24071200
PubMed: 30934757
PubMed Central: PMC6479758
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Lublin</wicri:regionArea><wicri:noRegion>20-290 Lublin</wicri:noRegion></affiliation></author><author><name sortKey="Panek, Jacek" sort="Panek, Jacek" uniqKey="Panek J" first="Jacek" last="Panek">Jacek Panek</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Agrophysics, Polish Academy of Sciences, 20-290 Lublin, Poland. j.panek@ipan.lublin.pl.</nlm:affiliation><country xml:lang="fr">Pologne</country><wicri:regionArea>Institute of Agrophysics, Polish Academy of Sciences, 20-290 Lublin</wicri:regionArea><wicri:noRegion>20-290 Lublin</wicri:noRegion></affiliation></author><author><name sortKey="Fr C, Magdalena" sort="Fr C, Magdalena" uniqKey="Fr C M" first="Magdalena" last="Fr C">Magdalena Fr C</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Agrophysics, Polish Academy of Sciences, 20-290 Lublin, Poland. m.frac@ipan.lublin.pl.</nlm:affiliation><country xml:lang="fr">Pologne</country><wicri:regionArea>Institute of Agrophysics, Polish Academy of Sciences, 20-290 Lublin</wicri:regionArea><wicri:noRegion>20-290 Lublin</wicri:noRegion></affiliation></author></analytic><series><title level="j">Molecules (Basel, Switzerland)</title><idno type="eISSN">1420-3049</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Crops, Agricultural (MeSH)</term><term>DNA, Ribosomal Spacer (MeSH)</term><term>Fungi (genetics)</term><term>Molecular Diagnostic Techniques (MeSH)</term><term>Phenotype (MeSH)</term><term>Plant Diseases (microbiology)</term><term>Rosaceae (microbiology)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Champignons (génétique)</term><term>Espaceur de l'ADN ribosomique (MeSH)</term><term>Maladies des plantes (microbiologie)</term><term>Phénotype (MeSH)</term><term>Produits agricoles (MeSH)</term><term>Rosaceae (microbiologie)</term><term>Techniques de diagnostic moléculaire (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>DNA, Ribosomal Spacer</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Fungi</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Champignons</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Maladies des plantes</term><term>Rosaceae</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Diseases</term><term>Rosaceae</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Crops, Agricultural</term><term>Molecular Diagnostic Techniques</term><term>Phenotype</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Espaceur de l'ADN ribosomique</term><term>Phénotype</term><term>Produits agricoles</term><term>Techniques de diagnostic moléculaire</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Increasing consumer awareness of potentially harmful pesticides used in conventional agriculture has prompted organic farming to become notably more prevalent in recent decades. Central European countries are some of the most important producers of blueberries, raspberries and strawberries in the world and organic cultivation methods for these fruits have a significant market share. Fungal pathogens are considered to be the most significant threat to organic crops of berries, causing serious economic losses and reducing yields. In order to ameliorate the harmful effects of pathogenic fungi on cultivations, the application of rapid and effective identification methods is essential. At present, various molecular methods are applied for fungal species recognition, such as PCR, qPCR, LAMP and NGS.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">30934757</PMID><DateCompleted><Year>2019</Year><Month>07</Month><Day>19</Day></DateCompleted><DateRevised><Year>2020</Year><Month>02</Month><Day>25</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1420-3049</ISSN><JournalIssue CitedMedium="Internet"><Volume>24</Volume><Issue>7</Issue><PubDate><Year>2019</Year><Month>Mar</Month><Day>27</Day></PubDate></JournalIssue><Title>Molecules (Basel, Switzerland)</Title><ISOAbbreviation>Molecules</ISOAbbreviation></Journal><ArticleTitle>Alternative Molecular-Based Diagnostic Methods of Plant Pathogenic Fungi Affecting Berry Crops-A Review.</ArticleTitle><ELocationID EIdType="pii" ValidYN="Y">E1200</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.3390/molecules24071200</ELocationID><Abstract><AbstractText>Increasing consumer awareness of potentially harmful pesticides used in conventional agriculture has prompted organic farming to become notably more prevalent in recent decades. Central European countries are some of the most important producers of blueberries, raspberries and strawberries in the world and organic cultivation methods for these fruits have a significant market share. Fungal pathogens are considered to be the most significant threat to organic crops of berries, causing serious economic losses and reducing yields. In order to ameliorate the harmful effects of pathogenic fungi on cultivations, the application of rapid and effective identification methods is essential. At present, various molecular methods are applied for fungal species recognition, such as PCR, qPCR, LAMP and NGS.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Malarczyk</LastName><ForeName>Dominika</ForeName><Initials>D</Initials><Identifier Source="ORCID">0000-0001-8547-8510</Identifier><AffiliationInfo><Affiliation>Institute of Agrophysics, Polish Academy of Sciences, 20-290 Lublin, Poland. d.malarczyk@ipan.lublin.pl.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Panek</LastName><ForeName>Jacek</ForeName><Initials>J</Initials><Identifier Source="ORCID">0000-0002-9217-5902</Identifier><AffiliationInfo><Affiliation>Institute of Agrophysics, Polish Academy of Sciences, 20-290 Lublin, Poland. j.panek@ipan.lublin.pl.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Frąc</LastName><ForeName>Magdalena</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Institute of Agrophysics, Polish Academy of Sciences, 20-290 Lublin, Poland. m.frac@ipan.lublin.pl.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>BIOSTRATEG3/344433/16/NCBR/2018</GrantID><Agency>Narodowe Centrum Badań i Rozwoju</Agency><Country></Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D016454">Review</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2019</Year><Month>03</Month><Day>27</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Molecules</MedlineTA><NlmUniqueID>100964009</NlmUniqueID><ISSNLinking>1420-3049</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D021903">DNA, Ribosomal Spacer</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D018556" 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cinerea</Keyword><Keyword MajorTopicYN="N">Colletotrichum acutatum</Keyword><Keyword MajorTopicYN="N">PCR</Keyword><Keyword MajorTopicYN="N">Phytophthora spp.</Keyword><Keyword MajorTopicYN="N">Verticillium spp.</Keyword><Keyword MajorTopicYN="N">molecular identification</Keyword><Keyword MajorTopicYN="N">organic agriculture</Keyword><Keyword MajorTopicYN="N">phytopathogenic fungi</Keyword><Keyword MajorTopicYN="N">qPCR</Keyword><Keyword MajorTopicYN="N">strawberry</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2019</Year><Month>02</Month><Day>13</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2019</Year><Month>03</Month><Day>14</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2019</Year><Month>03</Month><Day>23</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2019</Year><Month>4</Month><Day>3</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate 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